Edlib for 1 vs N or N vs N

Open Martinsos opened this issue 7 years ago • 2 comments

Edlib does pairwise (1 vs 1) alignment, and while it can also be used for 1 vs N or N vs N that way, it would be interesting to see if implementing direct support for 1 vs N or N vs N in it could offer some speedups, maybe by reusing some resources or smt hm. I think here it is important to understand such use cases.

Apr 23 '18 16:04 Martinsos

Actually #113 is connected to this.

Apr 23 '18 16:04 Martinsos

In https://github.com/Martinsos/edlib/issues/157, use case for this is also mentioned.

Easiest way to approach for this would be to optimize 1 vs N scenario and reuse, for example, Peq table, and maybe something more.

Aug 14 '20 15:08 Martinsos