GWA_tutorial
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Error: 'legend' is of length 0
When generating a plot to assess the type of relationship in the sample, I do get an R script erro. $ Rscript --no-save Relatedness.R Error in legend(1, 1, xjust = 1, yjust = 1, legend = levels(relatedness$RT), : 'legend' is of length 0 Execution halted.
What might be the problem?
In Relatedness.R change line:
relatedness = read.table("pihat_min0.2.genome", header=T)
to:
relatedness = read.table("pihat_min0.2.genome", header=T, stringsAsFactors = T)
Additionally, on the legend line you could change levels(relatedness$RT)
to unique(relatedness$RT)
In Relatedness.R change line:
relatedness = read.table("pihat_min0.2.genome", header=T)
to:
relatedness = read.table("pihat_min0.2.genome", header=T, stringsAsFactors = T)
Nice! It really works! Thank you very much.