alphapept
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Issues with double modifications
Describe the bug There can be issues when there would be double-modifications on the same amino acid. This can be the case, e.g. when having a modifcation on an n-terminus of a peptide and a modification on the amino acid of this particular peptide. Allthough it should be modified twice, the way AlphaPept parses the modifications it will only be added once.
To Reproduce
Example:
e.g. mod<^
(mod on n-terminus) & modP
(mod on P) on sample PEPTIDE
should be modmodPEPTIDE
but will be modPEPTIDE
.
Additional context For now there will not be a programmatic solution but a warning that one should use modifications with double-mass instead.