fig 4 and fig 5 issues

[Joaquin-c4]

Hi, julia

I send you the errors that I get when running the code

fig 4

first error in this cell of the section Read yeast go annotations downloaded from Uniprot:

yeast_go = format_uniprot_annotations(yeast_go) yeast_go

AttributeError Traceback (most recent call last) Cell In[13], line 1 ----> 1 yeast_go = format_uniprot_annotations(yeast_go) 2 yeast_go

Cell In[9], line 32, in format_uniprot_annotations(df, sep, regex) 28 # iterate proteins 29 for e,row in df.iterrows(): 30
31 # iterate annotation types ---> 32 for t,a in row.iteritems(): 33 try: 34 # skip empty strings 35 if str(a) in ["", "nan"]:

File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name) 5982 if ( 5983 name not in self._internal_names_set 5984 and name not in self._metadata 5985 and name not in self._accessors 5986 and self._info_axis._can_hold_identifiers_and_holds_name(name) 5987 ): 5988 return self[name] -> 5989 return object.getattribute(self, name)

AttributeError: 'Series' object has no attribute 'iteritems'

#then i cant run all the cells linked to the output "yeast_go"

fig 5 #from this part i was able to run the code until the "radar plot" section when trynging to execute this cell...

fig_radar = px.line_polar(ap4_av_profiles.stack("Fraction").reset_index().rename({0: "value"}, axis=1), r="value", theta="Fraction", line_group="Compartment", line_close=True, color="Compartment", color_discrete_sequence=px.colors.qualitative.D3)
.update_layout(width=500, height=230, font_size=8, margin=dict(t=20, b=0, r=0, l=20), template="simple_white")
.update_polars(radialaxis=dict(showgrid=True, gridcolor="darkgrey"), angularaxis=dict(showgrid=True, gridcolor="darkgrey")) fig_radar

AttributeError Traceback (most recent call last) Cell In[30], line 1 ----> 1 fig_radar = px.line_polar(ap4_av_profiles.stack("Fraction").reset_index().rename({0: "value"}, axis=1), 2 r="value", theta="Fraction", line_group="Compartment", line_close=True, 3 color="Compartment", color_discrete_sequence=px.colors.qualitative.D3)
4 .update_layout(width=500, height=230, font_size=8, margin=dict(t=20, b=0, r=0, l=20), template="simple_white")
5 .update_polars(radialaxis=dict(showgrid=True, gridcolor="darkgrey"), 6 angularaxis=dict(showgrid=True, gridcolor="darkgrey")) 7 fig_radar

File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name) 5982 if ( 5983 name not in self._internal_names_set 5984 and name not in self._metadata 5985 and name not in self._accessors 5986 and self._info_axis._can_hold_identifiers_and_holds_name(name) 5987 ): 5988 return self[name] -> 5989 return object.getattribute(self, name)

AttributeError: 'Series' object has no attribute 'stack'

thank you

joaquin