Manavalan Gajapathy

I'm not really familiar with [`Makefile`](https://github.com/lgmgeo/AnnotSV/blob/master/Makefile) but it appears to my naive eyes that copying of `application.properties` happens during step `make install-human-annotation`. This step though appears to only run as...

@lgmgeo Thanks for the quick response and working on this right away :) I am not too familiar with AnnotSV source code and so please take my thoughts/observations with a...

> This means that it is provided for documentation only, for bioconda/singularity/docker users. Oops, I totally missed that part. My apologies! I must have missed this part in the documentation....

I installed annotations using script `INSTALL_annotations.sh` (from `patch_AnnotSV` branch) and then ran _conda-installed_ AnnotSV with `-annotationsDir` pointing to them. Unfortunately, it behaved the same way as I reported yesterday. It...

Hi! Just checking in to see if there are any updates or fixes. Thanks :)

I plan to add a checkpoint to check for file `application.properties` and adding it if not present, prior to running annotsv (in either conda or singularity env). I will post...

@lgmgeo I was able to get v3.4 working in singularity. I copied `application.properties` (as shown in the doc) after installation of human annotation data, and this resolved the issue. Thanks...

This issue is same as #163