Manavalan Gajapathy

Hi @roblanf! In my original pull request, I had plots for reads N50, median q and base count, but multiqc's author had [replaced](https://github.com/ewels/MultiQC/commit/8ffa7c53664231f45686eeb1ebb73ba446ac9d0d#diff-2654f29fd8fe10f286c592673287fb4a) them with just readlength plot. [This](https://github.com/ewels/MultiQC/pull/854#issuecomment-449367902) is...

Just realized that you were talking about major plots (length_by_hour, etc.) produced by minionqc and not something simple like base count for which tabulation might just be sufficient. So yes,...

Ran in to this issue and then found that bazam can be [installed using conda](https://github.com/ssadedin/bazam/issues/7). Of course, this will work only with the released versions (currently 1.0.1 released in oct...

In my testing, survivor adds one to START for some reason, instead of subtracting one. Does this have to do with strand (don't see why though)? Also, it doesn't seem...

Here is the solution to reference tables - https://github.com/openjournals/docs/issues/5#issuecomment-1450525175

Faced similar issue installing it using pip in conda, and installing pybigwig resolved it. Here is the conda env yaml I used: ```yaml name: crossmap channels: - bioconda - conda-forge...

Fantastic! Thanks for implementing it fast! >Be careful with this, of course, as it could hide important signals. Yes, thanks for the heads up :)

This is likely related to #184

It looks like it has to do with the conda version of AnnotSV and not singularity or docker. * Conda env was created was conda env file ```yaml name: annotsv_bioconda...

Nextflow implementation of AnnotSV doesn't appear to use `-hpo` arg, which explains why this error was not seen there so far. https://github.com/lgmgeo/AnnotSV/issues/184#issuecomment-1603817934