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@mojaveazure I reproduced @whtns 's example with the pbmc_small dataset lik this: ``` library(Seurat) library(loomR) data("pbmc_small") lfile

BTW, `sessionInfo()` ``` R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 17763) Matrix products: default locale: [1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936 [3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C...

It seems it has to be on hold until these two got fixed: - https://github.com/nf-core/modules/issues/4246 - https://github.com/taxprofiler/taxpasta/issues/73

> @MajoroMask, the only solution that I can see immediately, is to sum up the relative abundances for the same taxon identifier. This would mean all relative abundances for the...

Hi @Midnighter , do you need additional profile data on fixing this? I been encountered the same problem with my dataset. How I call `taxpasta merge`: ```bash taxpasta merge -p...

BTW, can we have a parameter to control the compositionality check? Maybe a double type ranged [0, 1], 0 to turn it off?