ERROR: failed to open file 'C16_C_debreak/debreak_resdup_insertseq/chr1__2353209__247__4.fa'

[LileeGao]

I have two question when I run debreak, I found some error info like: ERROR: failed to open file 'C16_C_debreak/debreak_resdup_insertseq/chr1__2353209__247__4.fa' ERROR: failed to open file 'C16_C_debreak/debreak_resdup_insertseq/chr1__10465276__4539__8.fa'

But I get the debreak.vcf files I'm not sure if these error confidences affect the results

And the other thing is how can I get somatic SV, If I can call tumor SV use the --tumor mode and call the normal bam SV use the default mode and then Then look for the difference

I really need your help, I will be grateful if you can reply me in time