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run_preCluster.py --cpus=30 CalledProcessError(retcode, cmd)

Open bijendrabio opened this issue 2 years ago • 1 comments

Hello All, I am receiving following error while running the Family finding step of Cogent for a large dataset. Kindly suggest.

input file: isoseq_flnc.fasta

command: python /path/to/cDNA_Cupcake/cupcake2/tofu2/run_preCluster.py --cpus=30

raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '/usr/bin/time -v minimap2 -H -f 0.00001 -N 2000000 -m 20 -t 20 seed0.fasta seed0.fasta > seed0.fasta.seed0.fasta.f00001.minimap 2> seed0.fasta.seed0.fasta.f00001.minimap.log' returned non-zero exit status 127

bijendrabio avatar Jan 21 '22 17:01 bijendrabio