blitzgsea

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are there cases for significantly enriched pathways found without any genes in leading edges?

2

could you please explain the logic behind such cases?

tom-gome

Hi Alex, Should the returned `running_sum` be an array instead of zero in this line? https://github.com/MaayanLab/blitzgsea/blob/54ca73de4c89be3824562f2ef8998aa0f179fbf7/blitzgsea/__init__.py#L49 I ran into error when sum_hit_scores == 0. It turns out that this line...

chienhsiang

ValueError: x and y arrays must be equal in length along interpolation axis.

1

I tried to repro this and had a hard time -- seems to only happen when I'm multithreading, which makes attribution/reprex difficult. Nonetheless figured it was worth the report. ```{pytb}...

scottgigante-immunai

Is there any chance that you can implement DGSEA in python as part of your package? - https://academic.oup.com/bioinformatics/article/36/21/5247/5874441 - https://jamesjoly.github.io/DGSEA/about/ - https://github.com/JamesJoly/DGSEA (developed by @JamesJoly in R)

abearab