Dominik Klein

All downstream methods should be linear in memory, i.e. allow for batch-wise computation. > What are the memory requirement for the mp.impute() and mp.correlate() functions? For mp.impute(), if I try...

Add examples for advanced data passing, e.g. how to pass `x_attr/y_attr`

2

Can we create an issue for this? _Originally posted by @michalk8 in https://github.com/theislab/moscot/pull/633#discussion_r1444077840_

In #633 , we currently only have tests for the `TemporalProblem`. As the pipeline for a graph-based cost is quite different from the remaining costs, we need tests for all...

update check for categorical dtype

1

I got the following future warning: ```FutureWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, CategoricalDtype) instead if not (is_categorical_dtype(col) and is_numeric_dtype(col.cat.categories)):``` We should update...

We need to clean the logic in the `test_pass_arguments` tests in the quadratic applications. The way it is now is a bit messy.

At the moment, we cannot reproduce the multimodality tutorial, as the `cell_transition` doesn't work any more. A non-scalable work around is the following code ``` def aggregate_transport_matrix(adata_source, adata_target, tmat, aggregation_key...

> @michalk8 I unjitted the `_apply` function for now, see [42601e2](https://github.com/theislab/moscot/commit/42601e2ee855dd74a7b90270c94fbcb26944bef7). How would you like to proceed with this? Second major thing is pulling/pushing which I reverted for the moment,...

@michalk8 I unjitted the `_apply` function for now, see https://github.com/theislab/moscot/pull/515/commits/42601e2ee855dd74a7b90270c94fbcb26944bef7. How would you like to proceed with this? _Originally posted by @MUCDK in https://github.com/theislab/moscot/issues/515#issuecomment-1623894101_