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gwas2vcf JSON column names to VCF "columns"

Open darked89 opened this issue 2 years ago • 0 comments

Hello,

would it be possible for the more IT than GWAS crowd to have a fool-proof table along the lines:

beta_col => ES
pval_col => LP
se_col => SE
imp_info_col => SI

It gets more complicated further one goes from the obvious.

Thanks a lot for your help. DK

PS I am aware that automating the JSON creation from the TSV column names and some dictionary is a rather tall order, but would it be possible to have some CSV/JSON file with usable by gwas2vcf TSV column names encountered in the wild?

darked89 avatar Oct 22 '21 13:10 darked89