gwas-vcf-specification
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gwas2vcf JSON column names to VCF "columns"
Hello,
would it be possible for the more IT than GWAS crowd to have a fool-proof table along the lines:
beta_col => ES
pval_col => LP
se_col => SE
imp_info_col => SI
It gets more complicated further one goes from the obvious.
Thanks a lot for your help. DK
PS I am aware that automating the JSON creation from the TSV column names and some dictionary is a rather tall order, but would it be possible to have some CSV/JSON file with usable by gwas2vcf TSV column names encountered in the wild?