tomotwin-cryoet

tomotwin-cryoet copied to clipboard

This is because of a bug in napari: https://github.com/napari/napari/issues/6077 I changed the install instructions back to 0.4.17 until a solution is found: https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/36

thorstenwagner

Merge clusters

1

The @rdrighetto & co from @CellArchLab made the suggestion to add a tool that allows the merging of picks of a group of targets. I think that suggestion came from...

thorstenwagner

Hi, I have a tomogram that tomotwin model does a great job of separating the feature I am interested it. My question is is there a way of turning these...

hamid13r

Concatenating before moving to GPU

YousefMetwally

IndexError: Boolean index has wrong length

6

Hi all, I am getting the following error when i am trying to save selected particles. File ~/.local/lib/python3.10/site-packages/pandas/core/indexers/utils.py:539, in check_array_indexer(array=Index([3313, 3314, 3315, 3316, 3317, 3318, 3319,...5, 4866, 4867], dtype='int64', length=1555),...

pankajumich

[Request] save tomotwin result files in float32

1

My napari can open my raw/tomotwin input tomogram (024_06_06_10p4_Apix_MED4_TS_14_SIRT_CTF_no_Au_rec.mrc) well as  However, when I opened my umap (2024_06_06_10p4_Apix_MED4_TS_14_SIRT_CTF_no_Au_rec_a10_embeddings.tumap) with my napari, I saw...

kimdn

Needs help even to reproduce tutorial

2

I installed TomoTwin with `pip install tomotwin-cryoet` Then embedding ``` TomoTwin_model="/home/kimd999/brave/DN/model/TomoTwin/model/tomotwin_latest_2024_Sep.pth" input_tomo="tomo/tomo.mrc" batch_size="256" # If you run into memory issues, reduce the batchsize (-b). CUDA_VISIBLE_DEVICES=0,1 tomotwin_embed.py tomogram -m $TomoTwin_model -v...

kimdn

[Question] Can I install tomotwin without pip?

1

I think that 'pip install tomotwin-cryoet' has nothing to do with my current git cloned local git repo, since 'pip install tomotwin-cryoet' should just install with whatever TomoTwin author uploaded...

kimdn