calc_adc_params can produce off-by-one problems, crashing wrsamp
I have some data that crashes wrsamp because calc_adc_params produces values that don't fit the data (off by one):
chmin = -2147483648
chmax = 2147483648
IndexError: Channel 0 contain values outside allowed range [-2147483648, 2147483647] for fmt 32
As you can see, chmax is just above the dmax of 2147483647 for 32.
This is some data for reproduction: data.float32.zip
You can try it with:
data = np.reshape(np.fromfile("data.float32", dtype=np.float32), [-1, 12])
wfdb.wrsamp(
record_name="test",
sig_name=[f"d{x}" for x in range(12)],
units=["mv"] * 12,
fs=500,
# fmt=["16"] * 12,
p_signal=data
)
Note how passing fmt=16 fixes the problem in this particular case, probably by chance because it happens to not trigger the bug.
I am encountering a similar problem where the calculated digital values are outside of the valid range when using fmt='32' and pmax < 0. It appears that this is related to the cal_adc_gain_baseline function in _signal.py. The current code is
adc_gain = (MAX_I32) - dmin / abs(pmin)
Shouldn't it be
adc_gain = (MAX_I32 - dmin) / abs(pmin)
I've found that it's apparently a floating point precision error. When I add a float64 conversion before the wrsamp call, it works as expected:
data = np.reshape(np.fromfile("data.float32", dtype=np.float32), [-1, 12])
wfdb.wrsamp(
record_name="test",
sig_name=[f"d{x}" for x in range(12)],
units=["mv"] * 12,
fs=500,
p_signal=data
)
It seems a bit flimsy if it works with float64 but not float32, but perhaps it's because the parameter calculation auto-expands into float64, but adc() doesn't, so there is a mismatch of precision causing the error.
At the very least, wfdb should probably auto-convert to float64 before adc().