mimic-omop icon indicating copy to clipboard operation
mimic-omop copied to clipboard

Published 20 hours ago • verified publisher icon MIT-LCP

concept mapping

Open aparrot89 opened this issue 7 years ago • 1 comments

Hello Some questions about chart_label_to_concept.csv

  • first question = FiO2 : all the labels 'FiO2 Set', 'FiO2 (Analyzed)', 'HFO- FIO2', 'ecmo fio2' ... are linked to the same standard concept called 'Oxygen concentration breathed'. Do you think it's a good mapping because 'set' and 'analysed' mean different things!

  • second question = intracranial pressure. There are > 20 different items. The numbers of distinct values per label are quite differents. 'Intra Cranial Pressure' occurs 92306 times, 'icp' occurs 7 times. Moreover the distribution of values are quite differents. The median of ICP Camino is 89.5, the median of 'ICP' is 10!! Do you think we should map all to a unique standard concept?

aparrot89 avatar Jan 29 '18 10:01 aparrot89

  1. I don't think it's good to merge these without more thought, as you mentioned they are not necessarily the same but without looking at the map I can't be sure.

  2. if they're CareVue concepts then probably we can map them together, but again let me investigate first.

alistairewj avatar Jan 29 '18 14:01 alistairewj