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mimic3wdb-matched RECORDS file hast too many entries

Open tecamenz opened this issue 9 months ago • 0 comments

Prerequisites

  • [ x] Put an X between the brackets on this line if you have done all of the following:
    • Checked the online documentation: https://mimic.mit.edu/
    • Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=

Description

Description of the issue, including:

  • what you have tried Tried downloading mimic3wdb-matched using wfdb-python:
  • references to similar issues https://github.com/MIT-LCP/wfdb-python/issues/466
  • queries demonstrating your question (if applicable) wfdb.io.dl_database("mimic3wdb-matched", "mimic3wdb-matched", records='all', annotators='all', keep_subdirs=True, overwrite=False)

We are trying to download the mimic3wdb-matched database via wfdb.io.dl_database:

wfdb.io.dl_database("mimic3wdb-matched", "mimic3wdb-matched", records='all', annotators='all', keep_subdirs=True, overwrite=False)

After a long wait, we get an error indicating a missing file: wfdb.io._url.NetFileNotFoundError: 404 Error: Not Found for url: https://physionet.org/files/mimic3wdb-matched/1.0/p01/p017488/3783537_10000.hea

While investigating we found that the corresponding RECORDS file contains more records than there are in the database: https://physionet.org/files/mimic3wdb-matched/1.0/p01/p017488/RECORDS

RECORDS file: image

Actual content: image

Can someone adapt the RECORDS file to reflect the database content

tecamenz avatar Oct 13 '23 07:10 tecamenz