BrainSpace
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MICA-MNI
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
Hi everyone, I am trying to use BrainSpace on Google Colab. However, Colab is getting crashed whenever I run plot_hemispheres() function. I tried the tutorial codes provided on https://brainspace.readthedocs.io/en/latest/python_doc/auto_examples/index.html None...
Currently failing as there's no Python 3.11 wheels for VTK.
I am using a correlation matrix based on the Schaefer Atlas with 400x400 fc values. When running `gm.fit(correlation_matrix)`, I encounter the above mentioned error. When I set the sys.setrecursionlimit(10000), my...
Dear all, I am using the fmriprep output which has the dimension of [325325, 238]. E.g. as in the example given using the atlas = datasets.fetch_atlas_surf_destrieux() only has 20484 regions....
* add initial draft of virtualization - upload generate_brainspace_images.sh to create Docker and Singularity files using neurodocker - upload Dockerfile - upload Singularity * add initial draft of virtualization -...
Many users have reported issues with using `plot_hemispheres` on a remote server. This issue stems from `vtk`, one of our dependencies, requiring a display to exist. If you are running...
For very large matrices I had an out of memory error at [this line](https://github.com/MICA-MNI/BrainSpace/blob/666e43c6037418d8ffc150fd68c3c5f52867739f/matlab/%40GradientMaps/GradientMaps.m#L187). Matlab memory usage was much lower than the total memory available. However, with the following replacement...
* **What are you trying to do?** I"m running gradient analysis onto phase-locking networks obtained from source-space MEG data. I have a 52-parcel resolution but am not particularly interested in...
Is there a way to plot the dorsal view of the full brain and not each hemisphere separately?
Many thanks to the authors for creating brainspace, which helped me. But I was curious, how do you plot gradients using atlas and brain templates other than examples？ ### Here...
