Doc : Add information about environment variables in the doc

[rcremese]

I'm coming from V1 but this issue is for newcomers, Is is possible to add a link to setting_up_paths.md inside the first pages of the documentation as it is required for running the whole pipeline ?

I'm thinking either in :

• installation_instructions.md
• Usage instructions
• Dataset conversion

Furthermore, the output of the nnUNetv2_convert_old_nnUNet_dataset could be made more explicit if the user hasn't set the environment variables properly. Currently, the output is :

nnUNet_raw is not defined and nnU-Net can only be used on data for which preprocessed files are already present on your system. nnU-Net cannot be used for experiment planning and preprocessing like this. f this is not intended, please read documentation/setting_up_paths.md for information on how to set this up properly.
nnUNet_preprocessed is not defined and nnU-Net can not be used for preprocessing or training. If this is not intended, please read documentation/setting_up_paths.md for information on how to set this up.
nnUNet_results is not defined and nnU-Net cannot be used for training or inference. If this is not intended behavior, please read documentation/setting_up_paths.md for information on how to set this up.
Traceback (most recent call last):
  File "/pasteur/appa/homes/rocremes/mambaforge/envs/monai-env/bin/nnUNetv2_convert_old_nnUNet_dataset", line 8, in <module>
    sys.exit(convert_entry_point())
  File "/pasteur/appa/homes/rocremes/mambaforge/envs/monai-env/lib/python3.9/site-packages/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py", line 53, in convert_entry_point
    convert(args.input_folder, args.output_dataset_name)
  File "/pasteur/appa/homes/rocremes/mambaforge/envs/monai-env/lib/python3.9/site-packages/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py", line 13, in convert
    if isdir(join(nnUNet_raw, target_dataset_name)):
  File "/pasteur/appa/homes/rocremes/mambaforge/envs/monai-env/lib/python3.9/posixpath.py", line 76, in join
    a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType

It could be reduced to the first lines in an error message.