Running MyoPS dataset: no FileNotFoundError: No such file or directory:~nnUNetPlansv2.1_plans_2D.pkl

[mehrnia]

Hi, I try to run MyoPS 2020 which uses nnUNet in the 2nd part of it. I first ran the "!nnUNet_plan_and_preprocess -t 112" and "!nnUNet_plan_and_preprocess -t 112 --verify_dataset_integrity". Now I wanna run !nnUNet_train 2d nnUNetTrainerV2 112 0 --npz for different FOLD, but I'm getting following error. in which stage this .pkl file should have been produced:

[Kobalt93]

Hi mehrnia, Could you please tell me whether the preprocessing was successful? Is that the only file that's missing? Have you sat your system variables correctly?

[Kobalt93]

Feel free to reopen the issue if you still have problems.