Compute resource allocation?

[danledinh]

Is there a way to define number of cores, RAM usage, etc. for the pipelines?

[LuyiTian]

sorry it is not suported now. one way to speed up could be split the fastq for cell barcode matching and merge them after alignment to genome.

[sonalhenson]

@LuyiTian , would you recommend this splitting solution for bam files too? I already have barcode called and mapped reads in bam files. Should I split the bam by chromosome and run each separately to speed up the computation?

Thanks.