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[storage][bootloaders] Windows configure boot and esp flags for the EFI partition
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The UEFI partition that Windows creates has two flags set: boot and esp. Windows will still boot without those flags but then other programs such as os-prober in Linux will fail to recognize that it.
https://unix.stackexchange.com/questions/620657/do-you-need-to-set-bootable-flag-when-installing-linux-in-uefi-mode