Receiving error in pipeline

[Rum980]

Hello,

Thank you for creating and sharing this software. I tried running the pipeline but am receiving an error after some time. Here's the traceback:

Traceback (most recent call last): File "run_segment.py", line 183, in main(args) File "run_segment.py", line 102, in main softmax = load_softmax(pred_softmax_path, volume_info_path) File "/workspace/trustworthy-ai-fetal-brain-segmentation/src/deep_learning/inference_nnunet.py", line 34, in load_softmax softmax_cropped = np.load(softmax_path)['softmax'][None][0,...] File "/opt/conda/lib/python3.8/site-packages/numpy/lib/npyio.py", line 417, in load fid = stack.enter_context(open(os_fspath(file), "rb")) FileNotFoundError: [Errno 2] No such file or directory: '/data/M003/backboneAI/.npz'

Note: M003 is the subject directory. In the backboneAI folder, there are three files listed:

• M004.nii.gz
• M004.npz
• M004.pkl

The error seems as though it's not able to find .npz. Would you know how this can be resolved?

Thanks, Ramana