LucaMarconato
LucaMarconato
This is the scale 1 opened with FIJI
Here is an example of code for achieving what I described above (parsing the scale 1 instead of scale 0) of the H&E image and using this scale to compute...
Thanks @marcovarrone for reporting this and for implementing a solution, which from the profiling is giving excellent results! I am still doing some triaging some issues/feature requests so I haven't...
Thanks @stephenwilliams22, it looks great to me! I add/edited the following: - I added a thumbnail and included the notebook in the docs (it will appear with the next code...
Hi, for parsing it depends on the format and order of axes that QuPath uses. Looking at the JSON representation above it seems that the order of axes is x,...
Thanks both for reporting. The error you are getting is due to a bug on an internal pipeline that we use to convert the raw datasets to Zarr and upload...
I just made a release for spatialdata, spatialdata-io, napari-spatialdata and spatialdata-plot. The packages should be available via pip within minutes, and should be available in conda earliest in a few...
Yes, you should be able to install 0.2.2 already from pip: https://pypi.org/project/spatialdata/
@Tomatokeftes thanks for reaching out, I followed via e-mail for my availability for a meeting. If anyone is interested in the project please reach out to @Tomatokeftes or me via...
@blakesells7 I recommend the same approach as described by @aeisenbarth. In general I would advise against fitting the MSI data into a Visium object, as the `visium()` reader makes specific...