whokaryote
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conda installation issue
I was unable to install via conda. Got the following error:
UnsatisfiableError: The following specifications were found to be incompatible with each other:
(but nothing listed)
I was however able to install via github source, after modifying the numpy requirement (in setup.py) from 'numpy~=1.19.4'
to 'numpy>=1.19.4'
. But then the tiara step did not run successfully:
Running tiara with 1 thread...
Traceback (most recent call last):
File "/Users/minimo/miniconda3/envs/whokaryote/bin/tiara", line 5, in <module>
from tiara.main import main
File "/Users/minimo/miniconda3/envs/whokaryote/lib/python3.8/site-packages/tiara/__init__.py", line 1, in <module>
from tiara.src.transformations import TfidfWeighter
File "/Users/minimo/miniconda3/envs/whokaryote/lib/python3.8/site-packages/tiara/src/transformations.py", line 8, in <module>
from numba.typed import List as NumbaList
File "/Users/minimo/miniconda3/envs/whokaryote/lib/python3.8/site-packages/numba/__init__.py", line 42, in <module>
from numba.np.ufunc import (vectorize, guvectorize, threading_layer,
File "/Users/minimo/miniconda3/envs/whokaryote/lib/python3.8/site-packages/numba/np/ufunc/__init__.py", line 3, in <module>
from numba.np.ufunc.decorators import Vectorize, GUVectorize, vectorize, guvectorize
File "/Users/minimo/miniconda3/envs/whokaryote/lib/python3.8/site-packages/numba/np/ufunc/decorators.py", line 3, in <module>
from numba.np.ufunc import _internal
SystemError: initialization of _internal failed without raising an exception