whokaryote

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AttributeError: 'DecisionTreeClassifier' object has no attribute 'n_features_'

1

Hello, I installed whokaryote with conda and I am trying to run using this: whokaryote.py --contigs /home/shishido/Lichen_data/Meta_omics2023/contigs/contigs_L10.fasta --outdir whokaryote_outputL10 --f --threads 10 But I am getting some error (below), could...

TKSJ2020

conda installation issue

2

I was unable to install via conda. Got the following error: `UnsatisfiableError: The following specifications were found to be incompatible with each other: ` (but nothing listed) I was however...

mlcoleman

Hi! I saw your tweet and looked into the code of `whokaryote`, really nice tool. Since you're using Prodigal, I figured you may be interested in using Pyrodigal (https://github.com/althonos/pyrodigal), which...

althonos

Handling empty feature table

2

Hi, Thank you for your work on whokaryote. I have encountered a bug when whokaryote is run on very small MAGs without any valid features identified. A bit of an...

TimothyStephens