spyglass
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Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
### Discussed in https://github.com/LorenFrankLab/spyglass/discussions/663 Check and mapping exist [here](https://github.com/LorenFrankLab/spyglass/blob/master/src/spyglass/common/common_ephys.py#L131-L144). Prevents external users from inserting data Possible solves: - Add `else` that raises `NotImplementedError` and direct to novela documentation - Add...
@rly @edeno @lfrank **Is your feature request related to a problem? Please describe.** Some NWB files have multiple electrical series objects. For example, NWB files containing Neuropixels 1.0 data have...
**Is your feature request related to a problem? Please describe.** Selecting data from a merge table that is downstream of another merge table can be difficult. For example, `LinearizedPositionV1` does...
While default parameters are available for users to use as an example for what to insert into Parameters tables (`SpikeSortingPreprocessingParameters`, `SpikeSorterParameters`, `WaveformParameters`, `MetricParameters`, `AutomaticCurationParameters`), these are by no means inclusive...
can someone who is working on documentation or tutorial notebooks make a clear warning about the broken dependency between the ArtifactDetection table and the ArtifactRemovedIntervalList table. kyu explained to me...
Given a spikesorting across epochs, we need to find potential correspondences and save the bootstrapped distances between clusters, etc. in a table so that we can choose linking criteria and...
Although uncommon, some NWB files have multiple ElectricalSeries or other objects under `/acquisition/raw`. However, spyglass is currently limited to importing the NWB file only if there is a single object...
Lockfile
@lfrank @edeno How should we handle locking of the files? Where should the lockfiles live, i.e. where should `NWB_LOCK_FILE` and `ANALYSIS_LOCK_FILE` env vars point to?
It appears that there are a number of old recording directories in /stelmo/nwb/recording/ corresponding to entries in an old version of the SpikeSortingRecording table that has since been dropped. If...
**Is your feature request related to a problem? Please describe.** The database is populated with entries like defaults, defaults2, etc. These are not useful for users discovering parameter sets **Describe...