GillyG
GillyG
Hi Im running braker on the cluster using both protein data and RNA-seq data. For the RNA-seq data we have around 300 different individuals, so I am randomly selecting only...
Trying to run braker for the first time and im getting this error: ``` singularity exec braker3.sif braker.pl –species=Cfellah --genome=/work/FAC/mod_GCA_030586385.1_ASM3058638v1_genomic.fa --rnaseq_sets_ids=SRR24634932_1,SRR24634932_2 --rnaseq_sets_dirs=/scratch/lcalvogo/Braker/fastq #********************************************************************************** # BRAKER CONFIGURATION #********************************************************************************** # BRAKER CALL:...
I am trying to install GenomicFeatures but I received and error that seems to be related with the version of DelayedArray. I need version 0.26 but I cant load it...
Hi, I have managed to use salmon without any problem to analyse RNA-Seq (transcriptome) reads. However, at the moment I am trying to use it for small RNAs (microRNAs) quantification...
Hi I am trying to run TOGA, so far u successfully ran the first part to make the alignement. However whenever I try to run TOGA I get an error...
Hi, I am trying it to run it and it fails at what looks like the last step after a long time running. I dont understand what this error means...
**agat_sp_merge_annotations.pl output incompatible with cellranger** I have two gff files I want to merge. One is an old annotation, and the other is a new annotation I have just made...