HMMRATAC
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BR: Gradle command line test is failing
The gradle action "Run command line test" is failing on the feature-CICD
branch. It's error is:
Run java -jar ../build/libs/HMMRATAC-snapshot-exec.jar -b 65283_treat_rep1.chr22.bam -i 65283_treat_rep1.chr22.bam.bai -g hg19.chr22.genome -o Test2 --model 65283_chr22.model
Error: Unable to access jarfile ../build/libs/HMMRATAC-snapshot-exec.jar
##[error]Process completed with exit code 1.
It's not clear where the artifact being generated is.
Its throwing a heap space error. We either need to figure out how to change the settings to allow it, or have to make a more truncated test data set. I'll look into making a smaller data set ASAP
Have you made any progress with the truncated dataset? It would also be useful for me as well to have a smaller example that can be more easily used by our builder.
I see that the TestData folder contains 20to30MB files. Why are you not using those files for this?