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BR: Gradle command line test is failing

Open dvantwisk opened this issue 4 years ago • 3 comments

The gradle action "Run command line test" is failing on the feature-CICD branch. It's error is:

Run java -jar ../build/libs/HMMRATAC-snapshot-exec.jar -b 65283_treat_rep1.chr22.bam -i 65283_treat_rep1.chr22.bam.bai -g hg19.chr22.genome -o Test2 --model 65283_chr22.model
Error: Unable to access jarfile ../build/libs/HMMRATAC-snapshot-exec.jar
##[error]Process completed with exit code 1.

It's not clear where the artifact being generated is.

dvantwisk avatar Dec 17 '19 17:12 dvantwisk

Its throwing a heap space error. We either need to figure out how to change the settings to allow it, or have to make a more truncated test data set. I'll look into making a smaller data set ASAP

EvanTarbell avatar Dec 17 '19 18:12 EvanTarbell

Have you made any progress with the truncated dataset? It would also be useful for me as well to have a smaller example that can be more easily used by our builder.

dvantwisk avatar Jan 15 '20 18:01 dvantwisk

I see that the TestData folder contains 20to30MB files. Why are you not using those files for this?

jitsedesmet avatar May 26 '22 07:05 jitsedesmet