HMMRATAC
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Q: gappedPeak file visualization in IGV and interpretation
This is a screenshot of my gappedPeak file in IGV.
I'm guessing the blue bar is my open chromatin region while the extended line is my nucleosome? I understand having an open region flanked by nucleosome at both sides. But with this one, why would you have nucleosome, open chromatin, nucleosomes, open region and another nucleosome?