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                                            Lisa Sikkema

batch and max_kl_weight parameters ignored when mapping to scvi reference

Thanks for your responses! Right yes in the scArches tutorials the covariates are set that way (although not explained as far as I remember, so it might not be clear...

Label transfer code producing different outputs in different environments

Hey @Koncopd @alextopalova , any progress with figuring out where the bug is?

Label transfer code producing different outputs in different environments

This is as far as I got trying to narrow things down. Seems like the error only happens on our GPU, and only with specific versions of some packages: [scarches_bug_notes.xlsx](https://github.com/theislab/scarches/files/11591634/scarches_bug_notes.xlsx)...

Suggested improvements for label transfer function

I would also write it in such a way that it updates the anndata object rather than outputting pandas dataframes!