Camoco
Camoco copied to clipboard
LinkageIO
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
As FCR increases, there are random genes within the GO term that are not within the COB that get replaced with genes that ARE in the COB which results in...
When calling the `candidate_genes` function with the `include_num_intervening` option, not all genes will necessarily get this attribute. For instance, when calling with a larger list (from the `Sucrose` term, in...
If I have a data matrix that looks like this to serve as input into COB.from_table. | R1M-C2 | R2M-C2 | R3M-C2 | R1T-C2 | |---------------------|-----------|----------|-----------| | BDIBD21-3.1G0000700 | 0.440474...
This would be the same as the Ontology enrichment except there would be a step beforehand that maps SNPs to genes. Right now, the enrichment method works, but will never...
Currently have to make many '__getitem__' calls to get a list of many terms (such as for enrichment computation). This introduces significant slowdown to other wise near instant functions (such...