Camoco
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LinkageIO
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
Traceback (most recent call last): File "/home/gsun2unl/miniconda3/envs/camoco/bin/camoco", line 4, in __import__('pkg_resources').run_script('camoco==0.6.4', 'camoco') File "/home/gsun2unl/miniconda3/envs/camoco/lib/python3.8/site-packages/pkg_resources/__init__.py", line 651, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/gsun2unl/miniconda3/envs/camoco/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1448, in run_script exec(code, namespace, namespace) File...
Dear Rob, I am having problems with the installation of Camoco. I use the following command: $ pip install numpy $ git clone https://github.com/LinkageIO/Camoco.git $ cd Camoco $ python setup.py...
Hi Rob, Can you provide me with some guidance for browsing and extracting the co-expression network constructed by Camoco? I want to visualize the network and make plots via Cytoscape....
Is there a way to import the co-expression network (the COB object) into a format so that I can transform it into a networkX graph in my python script?
 For TG, the 7 SNPs should not yield a Nan value for 50kb collapsed SNPs
The global degree of genes are always representative of a z-score of 3, it should update when you change the significant edge score. ```ptyhon In [69]: cob = co.COB("W2691") [LOG]...
By default a SNP to gene mapping of Loci to themselves (window=1 and flank=0), but when input genes have overlapping genes (on the opposite strand) a SNP to gene mapping...