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Add metric QC function

Open lahuuki opened this issue 1 month ago • 0 comments

Adding a function to aid/standardize the QC process of new spe objects based off of work in Habenula_Visium, spatial_NAc, and Visium_SPG_AD.

Utilizes scater::isOutlier on three metrics log2(sum_umi), log2(sum_gene), and expr_chrM_ratio*100. Added functionality for handling spots in_tissue=FALSE .

lahuuki avatar May 06 '24 21:05 lahuuki