spatialLIBD
spatialLIBD copied to clipboard
Add metric QC function
Adding a function to aid/standardize the QC process of new spe
objects based off of work in Habenula_Visium, spatial_NAc, and Visium_SPG_AD.
Utilizes scater::isOutlier
on three metrics log2(sum_umi)
, log2(sum_gene)
, and expr_chrM_ratio*100
.
Added functionality for handling spots in_tissue=FALSE
.