HumanPilot icon indicating copy to clipboard operation
HumanPilot copied to clipboard

Error in `collect()`: ! Failed to collect lazy table.

Open FAFUshiyan opened this issue 2 years ago • 3 comments

Dear spatialLIBD team, I have completed the installation of spatialLIBD, but when executing spe <- fetch_data(type = "spe"), an error occurred. The error message is as follows: image

I would like to understand the cause of this error.

FAFUshiyan avatar Nov 17 '23 13:11 FAFUshiyan

See https://github.com/lmweber/WeberDivechaLCdata/issues/1#issuecomment-1834717960 and https://github.com/lmweber/WeberDivechaLCdata/issues/1#issuecomment-1834718947. In particular https://github.com/Bioconductor/BiocFileCache/pull/50#issuecomment-1781113054.

We would need to have your R session information output to help you further to check that the R package versions you are using are up to date.

Best, Leo

lcolladotor avatar Nov 30 '23 23:11 lcolladotor

See lmweber/WeberDivechaLCdata#1 (comment) and lmweber/WeberDivechaLCdata#1 (comment). In particular Bioconductor/BiocFileCache#50 (comment).

We would need to have your R session information output to help you further to check that the R package versions you are using are up to date.

Best, Leo

Hi Leo: I meet the same problem. my R version is 4.3.1 and BiocManager is 1.30.22 Best, Siqi

CSQxiaogongju avatar Dec 22 '23 05:12 CSQxiaogongju

See lmweber/WeberDivechaLCdata#1 (comment) and lmweber/WeberDivechaLCdata#1 (comment). In particular Bioconductor/BiocFileCache#50 (comment). We would need to have your R session information output to help you further to check that the R package versions you are using are up to date. Best, Leo

Hi Leo: I meet the same problem. my R version is 4.3.1 and BiocManager is 1.30.22 Best, Siqi

I success to solve the problem when I update the Bioconductor to 3.18

CSQxiaogongju avatar Dec 22 '23 22:12 CSQxiaogongju