LeonardosMageiros

compare_groups with a small number of samples.

7

Hi, I would like to calculate the differences between two groups of metagenomic samples using the compare_groups function. My concern is that I have a low number of samples in...

Creating a heat tree using the results of a glm analysis

7

Hi, I was wandering if it is possible to visualize the results of my generalized linear model analysis using the heat_tree function. Specifically I have an otu table (species vs...

groot-db output issues

2

Hi! I am exploring the option of using groot-db as it combines 3 well used AMR databases. I believe that this is a very good idea but i am facing...

Mapping hits using a pangenome

4

Hi, I have executed pyseer and I would like to map my unitigs not to the list of my input files but back to just one fasta/gff file that represents...

Hi, I believe it would be very helpful if in addition to the gene name you could pull out the gene description as well when you summarize the results of...

Problem running kaiju-makedb on a cluster

7

Hi, I have installed kaiju on a cluster that I am working on and after I created a kaijudb directory, I am trying to execute the following: qsub -V -cwd...

summarise metagenomics results

2

Hi, I have recently executed card bwt for a set of metagenomic reads that I have and I would like to summarize my results in one table so I can...