python-javabridge
python-javabridge copied to clipboard
Published
20 hours ago •
LeeKamentsky
LeeKamentsky
Unable to install using pip
Hello, When I try to install javabridge using pip, it fails with the following error:
pip install javabridge
Collecting javabridge
Using cached javabridge-1.0.14.tar.gz
Requirement already satisfied (use --upgrade to upgrade): numpy in ./anaconda/lib/python3.5/site-packages (from javabridge)
Building wheels for collected packages: javabridge
Running setup.py bdist_wheel for javabridge ... error
Complete output from command /Users/Rob/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/tmpcklst7alpip-wheel- --python-tag cp35:
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.5-x86_64-3.5
creating build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/__init__.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/_version.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/jutil.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/locate.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/noseplugin.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/wrappers.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
creating build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/__init__.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_cpython.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_javabridge.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_jutil.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_wrappers.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
creating build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/cpython.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/rhino-1.7R4.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/runnablequeue.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/test.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
running build_ext
javac -source 6 -target 6 /private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/java/org/cellprofiler/runnablequeue/RunnableQueue.java
Unable to locate an executable at "/Library/Java/JavaVirtualMachines/jre1.8.0_66.jre/Contents/Home/bin/javac" (-1)
error: command 'javac' failed with exit status 2
----------------------------------------
Failed building wheel for javabridge
Running setup.py clean for javabridge
Failed to build javabridge
Installing collected packages: javabridge
Running setup.py install for javabridge ... error
Complete output from command /Users/Rob/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-z9l3mx7l-record/install-record.txt --single-version-externally-managed --compile:
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
Failed to run /usr/libexec/java_home, defaulting to best guess for Java
Traceback (most recent call last):
File "/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/javabridge/locate.py", line 45, in find_javahome
os.path.join(os.path.dirname(path), "Libraries"),
File "/Users/Rob/anaconda/lib/python3.5/posixpath.py", line 89, in join
genericpath._check_arg_types('join', a, *p)
File "/Users/Rob/anaconda/lib/python3.5/genericpath.py", line 145, in _check_arg_types
raise TypeError("Can't mix strings and bytes in path components") from None
TypeError: Can't mix strings and bytes in path components
running install
running build
running build_py
creating build
creating build/lib.macosx-10.5-x86_64-3.5
creating build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/__init__.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/_version.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/jutil.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/locate.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/noseplugin.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
copying javabridge/wrappers.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge
creating build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/__init__.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_cpython.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_javabridge.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_jutil.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
copying javabridge/tests/test_wrappers.py -> build/lib.macosx-10.5-x86_64-3.5/javabridge/tests
creating build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/cpython.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/rhino-1.7R4.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/runnablequeue.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
copying javabridge/jars/test.jar -> build/lib.macosx-10.5-x86_64-3.5/javabridge/jars
running build_ext
javac -source 6 -target 6 /private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/java/org/cellprofiler/runnablequeue/RunnableQueue.java
Unable to locate an executable at "/Library/Java/JavaVirtualMachines/jre1.8.0_66.jre/Contents/Home/bin/javac" (-1)
error: command 'javac' failed with exit status 2
----------------------------------------
Command "/Users/Rob/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-z9l3mx7l-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/jn/pt_9j7j52wz9jq8bzlg7bf1h0000gn/T/pip-build-9lyy16or/javabridge/
Any suggestions?
Thanks, Rob
It looks like Javabridge's install is finding the JRE instead of the Java SDK:
Unable to locate an executable at "/Library/Java/JavaVirtualMachines/jre1.8.0_66.jre/Contents/Home/bin/javac
Do you have the SDK installed? If so and you are getting the above, you might try setting JAVA_HOME to point to the SDK's root directory before doing the pip install.
Hi guys, despite trying to follow all tips I found I juts cannot install javabridge on my ubuntu 18.04. I get:
(base) sebi06@sebastian-tuxedo:~$ echo $JAVA_HOME
/usr/lib/jvm/java-11-oracle
(base) sebi06@sebastian-tuxedo:~$ pip install javabridge
Collecting javabridge
Using cached https://files.pythonhosted.org/packages/a6/a0/c59bccabed99b1d4ac68166c59c679b375bfca75b78688b52c541b711578/javabridge-1.0.18.tar.gz
Requirement already satisfied: numpy in ./anaconda3/lib/python3.7/site-packages (from javabridge) (1.16.2)
Building wheels for collected packages: javabridge
Building wheel for javabridge (setup.py) ... error
Complete output from command /home/sebi06/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-a2kwc2qu/javabridge/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-q1kutxo5 --python-tag cp37:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/javabridge
copying javabridge/noseplugin.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/__init__.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/_version.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/jutil.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/locate.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/wrappers.py -> build/lib.linux-x86_64-3.7/javabridge
creating build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_javabridge.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/__init__.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_wrappers.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_cpython.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_jutil.py -> build/lib.linux-x86_64-3.7/javabridge/tests
creating build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/rhino-1.7R4.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/runnablequeue.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/test.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/cpython.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/libjava2cpython.so -> build/lib.linux-x86_64-3.7/javabridge/jars
running build_ext
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/runnablequeue/RunnableQueue.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
4 warnings
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/test/RealRect.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
4 warnings
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPython.java /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
Note: /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
4 warnings
building 'javabridge._javabridge' extension
creating build/temp.linux-x86_64-3.7
gcc -pthread -B /home/sebi06/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/jvm/java-11-oracle/include -I/usr/lib/jvm/java-11-oracle/include/linux -I/home/sebi06/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/home/sebi06/anaconda3/include/python3.7m -c _javabridge.c -o build/temp.linux-x86_64-3.7/_javabridge.o
In file included from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/syslimits.h:7:0,
from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:34,
from /home/sebi06/anaconda3/include/python3.7m/Python.h:11,
from _javabridge.c:4:
/usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:194:15: fatal error: limits.h: Datei oder Verzeichnis nicht gefunden
#include_next <limits.h> /* recurse down to the real one */
^~~~~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Failed building wheel for javabridge
Running setup.py clean for javabridge
Failed to build javabridge
Installing collected packages: javabridge
Running setup.py install for javabridge ... error
Complete output from command /home/sebi06/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-a2kwc2qu/javabridge/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-ydwolo09/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/javabridge
copying javabridge/noseplugin.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/__init__.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/_version.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/jutil.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/locate.py -> build/lib.linux-x86_64-3.7/javabridge
copying javabridge/wrappers.py -> build/lib.linux-x86_64-3.7/javabridge
creating build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_javabridge.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/__init__.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_wrappers.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_cpython.py -> build/lib.linux-x86_64-3.7/javabridge/tests
copying javabridge/tests/test_jutil.py -> build/lib.linux-x86_64-3.7/javabridge/tests
creating build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/rhino-1.7R4.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/runnablequeue.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/test.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/cpython.jar -> build/lib.linux-x86_64-3.7/javabridge/jars
copying javabridge/jars/libjava2cpython.so -> build/lib.linux-x86_64-3.7/javabridge/jars
running build_ext
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/runnablequeue/RunnableQueue.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
4 warnings
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/test/RealRect.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
4 warnings
javac -source 6 -target 6 /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPython.java /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
Note: /tmp/pip-install-a2kwc2qu/javabridge/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
4 warnings
building 'javabridge._javabridge' extension
creating build/temp.linux-x86_64-3.7
gcc -pthread -B /home/sebi06/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/jvm/java-11-oracle/include -I/usr/lib/jvm/java-11-oracle/include/linux -I/home/sebi06/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/home/sebi06/anaconda3/include/python3.7m -c _javabridge.c -o build/temp.linux-x86_64-3.7/_javabridge.o
In file included from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/syslimits.h:7:0,
from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:34,
from /home/sebi06/anaconda3/include/python3.7m/Python.h:11,
from _javabridge.c:4:
/usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:194:15: fatal error: limits.h: Datei oder Verzeichnis nicht gefunden
#include_next <limits.h> /* recurse down to the real one */
^~~~~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Command "/home/sebi06/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-a2kwc2qu/javabridge/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-ydwolo09/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-a2kwc2qu/javabridge/
