kPAL
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LUMC
Analysis toolkit and programming library for k-mer profiles
I added some basic type-checking to a few of your methods to avoid the cryptic TypeErrors in #9.
Hi, pretty basic stuff. I found some TypeErrors (code smell) from improper usage of your `from_file` function. Oddly enough, it looks like you're not type-checking your arguments. And essentially this...
hi, I got the following error when upgrading to the latest version of kPal. I'm a newbie of python. It seems related with cython. Could you please help? [xd010@eris1n2 ~]$...
The matrix module now only supports 1 kmer file. This means a merge or cat step is required while kpal can do this in 1 go.
Right now the modules that I did used did not giving any logging output. This makes it hard to see if it's doing something.
Right now there is need to first convert fastq files to fasta files to make a kmer profile. It would be nice if kpal support this without first converting. Extensions...
``` % virtualenv /bio/sw/kPAL % /bio/sw/kPAL/bin/pip install kPAL ``` Command /bio/sw/kPAL/bin/python -c "import setuptools;**file**='/bio/sw/kPAL/build/h5py/setup.py';exec(compile(open(**file**).read().replace('\r\n', '\n'), **file**, 'exec'))" install --single-version-externally-managed --record /tmp/pip-53rtkL-record/install-record.txt --install-headers /bio/sw/kPAL/include/site/python2.7 failed with error code 1 in /bio/sw/kPAL/build/h5py...
