Aaron Lun

It took a while, but we accidentally added this feature as a combination of other features. The workflow goes like this: - Do an analysis on the full dataset. -...

Of course: 

Is someone complaining about it? Seems fine to leave it as C++11. Must be loads of other packages doing that as well. Alternative is to just not specify anything, and...

Looks related to #232, and probably fixed by f3c97e7092417068980876792be88ad3ec3ab229. It seems you'd have to update your installation anyway, given that it says you're running BioC 3.16 (latest is 3.18).

> Q1. If I want to use `de.method="wilcox"`, would you mind giving me how to modify the code? `de.method="wilcox"` just uses genes derived from `scran::findMarkers`. Basically something like: ```r pairwise

Turns out there was a PR about this quite some time ago (LTLA/SingleRBook#1), that I never noticed because I never get notification about book failures. Once that gets merged, the...

I too would be curious. In addition to the concerns raised by Dan, there is also the issue of the number of genes involved. Flow cytometry uses fewer features, even...

There might be something in the `flow*` set of Bioconductor packages that would try to do this. If not, I would suggest just doing something very simple to begin with,...

Happy to take a PR to update the default miniconda version. Though I tried to do that last time and the BioC build machines kept timing out, so that would...

I think we'd basically want to go to whatever the latest is - based on https://repo.anaconda.com/miniconda/, it seems to be `py311_23.11.0-2`. Probably need to discuss this on Slack to notify...