batchelor
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Problem with mixed DelayedMatrix & dgCMatrix data type
I have a list of SingleCellExperiment
objects from 10X and non-10X experiments, and the counts
and logcounts
assays have a mixture of DelayedMatrix
(10X) & dgCMatrix
(non-10X) data types.
In such case I noticed fastMNN
will go into some kind of never-ending loop and does not complete even after a long long time. However, fastMNN
will run perfectly and very quickly If I specifically changed the logcounts
assays from DelayedMatrix
to dgCMatrix
so that all the inputs have the dgCMatrix
data type.
R version 4.0.3 (2020-10-10)
batchelor_1.6.3