Unexpected Errors second stage alignment

[abdullahbilalawan]

In the Masif search process after running the descriptors, I am. Unable to run the second_alignment_nn. Py successfully the pretrained model doesn't load. Any hint can u provide the correct pretrained.hdf5 file. Thanks. Hoping for a positive response

[pablogainza]

Hi ! Could you provide more info? Can you show the error? Are you running it in docker?

[knawel]

Perhaps I have the same error while using precomputed data (running in docker, GPU is visible). Here is the output ./second_stage_masif.sh

root@ID:/masif/comparison/masif_ppi_search/masif_descriptors_nn# ./second_stage_masif.sh 100
2021-10-04 07:57:10.612890: I tensorflow/core/platform/cpu_feature_guard.cc:141] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 AVX512F FMA
['/masif/source//masif_ppi_search/second_stage_alignment_nn.py', '../../../data/masif_ppi_search', '100', '2000', '1000', 'masif']
Loading patch coordinates for 2I32_A_E
Traceback (most recent call last):
  File "/masif/source//masif_ppi_search/second_stage_alignment_nn.py", line 114, in <module>
    read_point_cloud(
NameError: name 'read_point_cloud' is not defined

[knawel]

git pull helps