SumStatsRehab

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LiftOver function not working for hg38 to hg19?

1

Hello, I have been having an issue converting a GWAS file from genome build 38 to genome build 37 (hg19). In order to do this, I specified hg38 for "build"...

DavisCammann

AttributeError: /usr/lib64/libmagic.so.1: undefined symbol: magic_list

1

##Comman git clone https://github.com/Kukuster/SumStatsRehab.git && cd SumStatsRehab pip install -r requirements.txt python3 setup.py build python3 setup.py install SumStatsRehab --help ##Bug SumStatsRehab]$ SumStatsRehab --help Traceback (most recent call last): File "/xxx/software/miniconda3/bin/SumStatsRehab",...

jingydz

The fix command fails halfway through execution, at Step 7. Error log: ``` === Step 6: Analyze the report after REHAB === Going to sort the GWAS SS file by...

Kukuster

I tried to restore Chr and BP for a file including rsid, EA, OA, beta, SE, and p-value (link to download the summary statistics: http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST009001-GCST010000/GCST009160/Wood_et_al_2013_PMID_23696881_1000G_circulating_molecules.txt.gz) but SumStatsRehab didn't work and...

carlostellophd