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What does '-E'/evaluation mode do?

Open Andy-B-123 opened this issue 9 months ago • 0 comments

Hi, thank you for this tool and for your thorough and helpful documentation and examples!

I'm looking through the options and see the '-E' flag labelled as 'Run LiftOn in evaluation mode'.

When I try and run this with the examples (eg the HoneyBee one) it produces an error? eg:

lifton -g HAv3.1_genomic.gff -o lifton.gff3 -copies ASM1932182v1_genomic.fna HAv3.1_genomic.fna -E

proceeds to start running normally and then errors at:

>> Creating target database :  lifton.gff3
gffutils database build failed with lifton.gff3 cannot be found and does not appear to be a URL

Is 'Evaluation mode' more of a testing feature? Thanks!

Andy-B-123 avatar May 23 '24 02:05 Andy-B-123