cell-cycle & mitochondrial regression

[kvshams]

Is there any way to use cell-cycle & mitochondrial fraction regressed data for PHATE? Thanks, Shams

[Alexgr97]

The short answer is yes absolutely. The long answer is: what trouble are you having in making this happen?

[Alexgr97]

^^^ wasn't meant to sound so negative!!! more just - are you getting errors with doing this? if yes, what errors etc