kotlin-numpy
kotlin-numpy copied to clipboard
Published
20 hours ago •
Kotlin
Kotlin
Issues get kotlin-numpy running
Ok, so, I should have all the requirements listed
elect@5800x:~/Documents/minterpy/tests$ python --version
Python 3.8.6
elect@5800x:~/Documents/minterpy/tests$ python3 -c "import numpy; print(numpy.__version__)"
1.20.1
gcc should be installed within build-essential
However, as soon as I try to use it with binomial(m + n, doubleArrayOf(n.toDouble())), then I get
"ERROR: Command errored out with exit status 1:
java.lang.Exception: "ERROR: Command errored out with exit status 1:
command: /usr/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-1y8kjzsu/ktnumpy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-1y8kjzsu/ktnumpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-w7_vgjcm
cwd: /tmp/pip-install-1y8kjzsu/ktnumpy/
Complete output (9 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-1y8kjzsu/ktnumpy/setup.py", line 67, in <module>
include_dirs=get_java_includes() + ['src/main/ktnumpy/jni/include', get_numpy_include()]
File "/tmp/pip-install-1y8kjzsu/ktnumpy/buildScr/python/utils.py", line 76, in get_java_includes
java_include = os.path.join(java_home, 'include')
File "/usr/lib/python3.8/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output." when executing the command: python -m pip install -i https://pypi.org/simple/ ktnumpy==0.1.5
at org.jetbrains.numkt.LibraryLoader.execCommand(NativeLibUtils.kt:173)
at org.jetbrains.numkt.LibraryLoader.loadLibraries(NativeLibUtils.kt:129)
at org.jetbrains.numkt.Interpreter.initialize(Interpreter.kt:49)
at org.jetbrains.numkt.Interpreter.access$initialize(Interpreter.kt:23)
at org.jetbrains.numkt.Interpreter$Companion.getInterpreter(Interpreter.kt:30)
at org.jetbrains.numkt.UtilsKt.callFunc(Utils.kt:59)
at org.jetbrains.numkt.UtilsKt.callFunc$default(Utils.kt:57)
at org.jetbrains.numkt.random.Random$Companion.binomial(Random.kt:237)
at minterpy.MultiIndexUtilsKt.getExponentMatrix(multiIndexUtils.kt:47)
at minterpy.MultiIndex$Companion.fromDegree(MultiIndex.kt:8)
at core.MultiIndexTestKt.lexSmallerOrEqualTest(MultiIndexTest.kt:19)
at core.MultiIndexTest$1$1.invoke(MultiIndexTest.kt:12)
at core.MultiIndexTest$1$1.invoke(MultiIndexTest.kt:6)
at core.AuxiliariesKt$checkDifferentSettings$1.invoke(auxiliaries.kt:25)
at core.AuxiliariesKt$checkDifferentSettings$1.invoke(auxiliaries.kt)
at core.UtilsKt.product(utils.kt:7)
at core.AuxiliariesKt.checkDifferentSettings(auxiliaries.kt:23)
at core.AuxiliariesKt.checkDifferentSettings$default(auxiliaries.kt:22)
at core.MultiIndexTest$1.invokeSuspend(MultiIndexTest.kt:12)
at core.MultiIndexTest$1.invoke(MultiIndexTest.kt)
at io.kotest.core.spec.style.scopes.StringSpecRootScope$invoke$1.invokeSuspend(StringSpecRootScope.kt:58)
at io.kotest.core.spec.style.scopes.StringSpecRootScope$invoke$1.invoke(StringSpecRootScope.kt)
at io.kotest.core.internal.ExecutionsKt$executeWithBehaviours$2$1.invokeSuspend(executions.kt:13)
at io.kotest.core.internal.ExecutionsKt$executeWithBehaviours$2$1.invoke(executions.kt)
at io.kotest.core.internal.ExecutionsKt.wrapTestWithGlobalAssert(executions.kt:39)
at io.kotest.core.internal.ExecutionsKt$executeWithBehaviours$2.invokeSuspend(executions.kt:12)
at io.kotest.core.internal.ExecutionsKt$executeWithBehaviours$2.invoke(executions.kt)
at io.kotest.core.internal.ExecutionsKt$wrapTestWithAssertionModeCheck$2.invokeSuspend(executions.kt:25)
at io.kotest.core.internal.ExecutionsKt$wrapTestWithAssertionModeCheck$2.invoke(executions.kt)
at io.kotest.core.internal.AssertionsCheckKt.executeWithAssertionsCheck(assertionsCheck.kt:25)
at io.kotest.core.internal.ExecutionsKt.wrapTestWithAssertionModeCheck(executions.kt:24)
at io.kotest.core.internal.ExecutionsKt.executeWithBehaviours(executions.kt:11)
at io.kotest.core.internal.TestCaseExecutor$executeInScope$2.invokeSuspend(TestCaseExecutor.kt:266)
at io.kotest.core.internal.TestCaseExecutor$executeInScope$2.invoke(TestCaseExecutor.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturn(Undispatched.kt:91)
at kotlinx.coroutines.CoroutineScopeKt.coroutineScope(CoroutineScope.kt:194)
at io.kotest.core.internal.TestCaseExecutor.executeInScope(TestCaseExecutor.kt:260)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3$1$1.invokeSuspend(TestCaseExecutor.kt:232)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3$1$1.invoke(TestCaseExecutor.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturnIgnoreTimeout(Undispatched.kt:102)
at kotlinx.coroutines.TimeoutKt.setupTimeout(Timeout.kt:148)
at kotlinx.coroutines.TimeoutKt.withTimeout(Timeout.kt:44)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3$1.invokeSuspend(TestCaseExecutor.kt:231)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3$1.invoke(TestCaseExecutor.kt)
at io.kotest.engine.ExecutorExecutionContext$executeWithTimeoutInterruption$3.invokeSuspend(ExecutorExecutionContext.kt:77)
at io.kotest.engine.ExecutorExecutionContext$executeWithTimeoutInterruption$3.invoke(ExecutorExecutionContext.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturn(Undispatched.kt:91)
at kotlinx.coroutines.BuildersKt__Builders_commonKt.withContext(Builders.common.kt:165)
at kotlinx.coroutines.BuildersKt.withContext(Unknown Source)
at io.kotest.engine.ExecutorExecutionContext.executeWithTimeoutInterruption(ExecutorExecutionContext.kt:75)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3.invokeSuspend(TestCaseExecutor.kt:230)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1$3.invoke(TestCaseExecutor.kt)
at io.kotest.mpp.ReplayKt.replay(replay.kt:18)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1.invokeSuspend(TestCaseExecutor.kt:225)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1$1.invoke(TestCaseExecutor.kt)
at io.kotest.engine.ExecutorExecutionContext$executeWithTimeoutInterruption$3.invokeSuspend(ExecutorExecutionContext.kt:77)
at io.kotest.engine.ExecutorExecutionContext$executeWithTimeoutInterruption$3.invoke(ExecutorExecutionContext.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturn(Undispatched.kt:91)
at kotlinx.coroutines.BuildersKt__Builders_commonKt.withContext(Builders.common.kt:165)
at kotlinx.coroutines.BuildersKt.withContext(Unknown Source)
at io.kotest.engine.ExecutorExecutionContext.executeWithTimeoutInterruption(ExecutorExecutionContext.kt:75)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1.invokeSuspend(TestCaseExecutor.kt:218)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2$1.invoke(TestCaseExecutor.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturnIgnoreTimeout(Undispatched.kt:102)
at kotlinx.coroutines.TimeoutKt.setupTimeout(Timeout.kt:148)
at kotlinx.coroutines.TimeoutKt.withTimeout(Timeout.kt:44)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2.invokeSuspend(TestCaseExecutor.kt:217)
at io.kotest.core.internal.TestCaseExecutor$executeAndWait$2.invoke(TestCaseExecutor.kt)
at kotlinx.coroutines.intrinsics.UndispatchedKt.startUndispatchedOrReturn(Undispatched.kt:91)
at kotlinx.coroutines.SupervisorKt.supervisorScope(Supervisor.kt:57)
at io.kotest.core.internal.TestCaseExecutor.executeAndWait(TestCaseExecutor.kt:213)
at io.kotest.core.internal.TestCaseExecutor.invokeTestCase(TestCaseExecutor.kt:182)
at io.kotest.core.internal.TestCaseExecutor.executeActiveTest(TestCaseExecutor.kt:151)
at io.kotest.core.internal.TestCaseExecutor$intercept$innerExecute$1$1.invokeSuspend(TestCaseExecutor.kt:89)
at io.kotest.core.internal.TestCaseExecutor$intercept$innerExecute$1$1.invoke(TestCaseExecutor.kt)
at io.kotest.core.internal.TestCaseExecutor.executeIfActive(TestCaseExecutor.kt:115)
at io.kotest.core.internal.TestCaseExecutor$intercept$innerExecute$1.invokeSuspend(TestCaseExecutor.kt:89)
at io.kotest.core.internal.TestCaseExecutor$intercept$innerExecute$1.invoke(TestCaseExecutor.kt)
at io.kotest.core.internal.TestCaseExecutor.intercept(TestCaseExecutor.kt:103)
at io.kotest.core.internal.TestCaseExecutor.execute(TestCaseExecutor.kt:69)
at io.kotest.engine.spec.runners.SingleInstanceSpecRunner.runTest(SingleInstanceSpecRunner.kt:106)
at io.kotest.engine.spec.runners.SingleInstanceSpecRunner$execute$2$invokeSuspend$$inlined$invoke$lambda$2.invokeSuspend(SingleInstanceSpecRunner.kt:56)
at io.kotest.engine.spec.runners.SingleInstanceSpecRunner$execute$2$invokeSuspend$$inlined$invoke$lambda$2.invoke(SingleInstanceSpecRunner.kt)
at io.kotest.engine.launchers.SequentialTestLauncher$launch$$inlined$forEach$lambda$1$1.invokeSuspend(SequentialTestLauncher.kt:22)
at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:33)
at kotlinx.coroutines.DispatchedTask.run(DispatchedTask.kt:106)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
I have java available
elect@5800x:~$ java --version
openjdk 11.0.10 2021-01-19
OpenJDK Runtime Environment (build 11.0.10+9-Ubuntu-0ubuntu1.20.10)
OpenJDK 64-Bit Server VM (build 11.0.10+9-Ubuntu-0ubuntu1.20.10, mixed mode, sharing)
Is this enough?
Not really
To build the native part of the library, the script looks for the include folder from the java directory. To do this, you must have JAVA_HOME in PATH.
check if JAVA_HOME exists, run in terminal:
echo $JAVA_HOME