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Python fragmentation

Open Koeng101 opened this issue 5 months ago • 0 comments

I want to be able to optimize and then fragment using all python. Test protein:

SGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGT

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