Pre-process OBOs to avoid axiom conflicts

[caufieldjh]

Would like to retain hierarchies within OBOs when present (i.e., going beyond base versions, or using "maximal" versions when available) but want to avoid axiom conflicts.

Describe the desired behavior

Final TSV node and edge lists should contain reasoned relationships inherited from imported OBOs but should avoid reliance upon axioms likely to conflict upon graph assembly.

ROBOT can do this when used as a pre-processing step: See https://github.com/INCATools/ubergraph/blob/0bcc3864d5bb90b02029ef59147351e190188d11/Makefile#L19-L25

But this may not handle everything?

Additional context

Phenotype ontologies (e.g., upheno, hpo) may require specific concerns re: reasoning.

See also https://github.com/INCATools/ontology-development-kit/issues/454