GeneTrajectory

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No cell overlap between new meta data and Seurat object

2

Hi! Thank you for developing the package!when I download human_myeloid_seurat_obj.rds and run the vignette `data_S$celltype

handesome

how to plot the label of genes in 3d plot?

3

I don't understand how to determine if a gene is in the end of trajectory, I have a list of markers of interest. they have highers pseudoorder values. ho can...

feanaros

is possible to compare conditions?

1

hi, I have a dataset of integrated KO + WT cells. Is it possible to split in some way the trajectories for each condition in R?

feanaros

There is no output even a warning, when I compute gene-gene distances with the function cal_ot_mat_from_numpy.

1

Hi! I installed module gene_trajectory with pip in a conda env.I can comput the gene-gene distances with the seurat data in GeneTrajectory tutorial and the progress _bar are showed in...

Fufu-Hu

Issue with compute gene-gene distances

12

I tried to set up a virtualenv using [reticulate], however, I can not find the module. Here is the output: `> cal_ot_mat_from_numpy

chen-peng-1874

After studying the GeneTrajectory tutorial and R script in https://klugerlab.github.io/GeneTrajectory/articles/GeneTrajectory.html and github, I successfully completed the entire process. There are still some confusions that I don’t understand and can’t solve....

TreetoForest