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change ansible flow role to reference arborworkflows repo. Are there others like this?

curtislisle

update for new girder

1

following: http://girder.readthedocs.io/en/latest/migration-guide.html

lukejharmon

had to add "client_max_body_size 500M" to arbor-girder in sites-available nginx config file. Had a case where a >1MB tree file wouldn't upload.

curtislisle

Read Nexus tree or tree/matrix files

7

Nexus files are used often in phylogenetics. Instead of having to support our own parsers, we should adopt mature parsers if they exist. The parser below handles Nexus and Newick...

curtislisle

Text file interpretation into various datatypes should be improved

3

Text files should have better default interpretations if this is possible. It is suggested to interpret as TSV or CSV initially

curtislisle

Trees produced from Treetimer (OpenTree) can only be downloaded/visualized/saved as json

1

Here is an example output tree. Any ideas why this tree isn't being converted to other formats? [Link to file on arbor1](http://54.83.6.133:9080/girder#item/577fc68d4c46530515578d85)

uyedaj

In order to track stats

jeffbaumes

jeffbaumes

Should be triggered on browser back button etc.

jeffbaumes

Grunt option to install arbor vs tangelo logo

2

Will enable non-ansible logo setting (extension of #109).

jeffbaumes