Girder 5 Upgrade

[BryonLewis]

Following the Girder 5 Upgrade

Using Migration Guide

ON HOLD: This is on hold until I get some way to propery set the girder plugins to utilize the /girder installation location.

TODO:

• [x] Tag new version of builds to girder-5
• [x] Update Environment Variables
  • [x] WORKER_API_URL -> GIRDER_SETTING_WORKER_API_URL
  • [x] CELERY_BROKER_URL -> GIRDER_WORKER_BROKER
  • [x] Add GIRDER_WORKER_BACKEND
• [x] Remove RUN girder build and corresponding logic from the docker build process
• [x] replace all import logger from girder with import logging and configuration a logger
• [x] Update pyproject.toml dependencies to use girder-5 compatible versions of girder plugins
• [x] Specifically update the large-image pluging to use the girder 5 version
• [x] add the girder-worker-plugin and replace calls that were in girder_worker.girder_plugin to use girder_worker_plugin
• [x] Modify the __init__.py to configure the route for the DIVE Vue application interface.
• [x] Finalize the Girder Core build so it will build all plugins with the proper references to files. Currently plugins aren't properly referencing the /girder subpath
• [x] Add Redis service for Notification system and provide notification system to local workers
• [ ] Update client code to use websockets vs the eventstream that was previously being used for notifications (may require overriding some GWC stuff)
  • [x] Create new branch in Girder-Web-Components using Websockets instead
  • [x] use branch in dev testing of the client application
  • [x] Confirm the new branch would work for websocket communication by adding a test endpoint for sending notificaitons
• [x] Testing conversion tasks
• [x] Testing Pipeline tasks
• [x] Testing training tasks.
• [ ] Test import of S3/MinIO data and ensure it works
  • [ ] Determine why events aren't triggering for the import process