formatIMGT.sh NullPointerException

[zezzipa]

Hi again,

I have downloaded the Alignments_Rel_3330.zip from https://github.com/ANHIG/IMGTHLA and put the hla_nom_g.txt in that folder. It seem to be working fine at first to create the new reference with formatIMGT.sh but then it crashes, the last part of the log is as follow:

Processing [Y] <<<<<<<<<< nucRefAl: Y01:01 genRefAl: Y01:01 refGeneName on nuc and gen are same Wrting to : /proj/uppstore2018100/kourami-0.9.6/scripts/../custom_db/3.33.0/Y_gen.txt Wrting to : /proj/uppstore2018100/kourami-0.9.6/scripts/../custom_db/3.33.0/Y_nuc.txt REF SEQ names differs : (nuc):Y*01:01 (gen):Y java.lang.NullPointerException at Sequence.processBlock(Sequence.java:554) at Sequence.(Sequence.java:498) at MergeMSFs.mergeAndAdd(MergeMSFs.java:383) at MergeMSFs.mergeAndAdd(MergeMSFs.java:372) at MergeMSFs.merge(MergeMSFs.java:298) at FormatIMGT.processGene(FormatIMGT.java:199) at FormatIMGT.main(FormatIMGT.java:100)

Any idea what the problem might be? Thank you in advance for the help!